SNP Profiles of EET 272 [ECU]   View Data

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 1234567891011121314
_Input profile
TTCCACGGCTGGAACCAACTAGGGAACC
1._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
2._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
3._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
4._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
5._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
6._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
7._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
8._EET_272_[ECU]
__ACGGCT_AACCAACT__AA_
9._EET_272_[ECU]
__AC_CT_AACCAACT____
10._RUQ_6
__AC_____AA_AG___
11._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
12._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
13._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
14._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
15._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
16._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
17._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
18._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
19._GC-03-032-3-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
20._GC-03-032-3-11
TTCCCCGGCCGG_CCAGCCGGGGAACC
21._EET_272_[ECU]
__CCGGCC_AACCAGCC__AA_
22._EET_272_[ECU]
__CCGGCC__CCAGCC__AA_
23._RUQ_6
AACCACCCAGGGAAGGAAAGAGGGAAGG
24._MITC-000381
AACCACCCAGGGAAGGAAAGAGGGAAGG
25._GC-03-32-3-11
AACCCCCCGGGGACGGAGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AACCCTGTGGAACCCTTTGGGGTTACCC
1._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
2._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
3._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
4._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
5._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
6._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
7._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
8._EET_272_[ECU]
AACCCTGTGGAA_CT_GG___CC
9._EET_272_[ECU]
AA_CTGT_AA_CT_GG____
10._RUQ_6
_AC__GG_CC_TTGGGG_ACCC
11._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
12._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
13._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
14._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
15._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
16._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
17._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
18._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
19._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
20._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
21._EET_272_[ECU]
AAACCCGTCGCC_TT_GG___GG
22._EET_272_[ECU]
AAACCCGTCGCC_TT_GG___GG
23._RUQ_6
_CC_ACGGAAGGAG_CCGGAAACGG
24._MITC-000381
_CC_ACGGAAGGAG_CCGGAAACGG
25._GC-03-32-3-11
_AC_ACCGCCAGAA_CCAGAAAACC
 29303132333435363738394041 
_Input profile
CCTTAGCTGGGGTTTTTTCCTTCCAAX_X
1._EET_272_[ECU]
_CTAGCT___TT__TTCCAAX_X
2._EET_272_[ECU]
_CTAGCT___TT__TTCCAAX_X
3._EET_272_[ECU]
_CTAGCT___TT__TTCCAAX_X
4._EET_272_[ECU]
_CTAGCT___TT__TTCCAAX_X
5._EET_272_[ECU]
_CTAGCT___TT__TTCCAAX_X
6._EET_272_[ECU]
_CTAGCT___TT__TTCCAAX_X
7._EET_272_[ECU]
_CTAGCT___TT__TTCCAAX_X
8._EET_272_[ECU]
_CTAGCT___TT__TTCCAAX_X
9._EET_272_[ECU]
_CTAGCT___TT__TT_AAX_X
10._RUQ_6
__AG____TT___CC_X_X
11._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
12._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
13._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
14._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
15._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
16._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
17._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
18._GC-03-032-3-11
CCCTAGCTGGGGTTTT_CCTTCCAAX_X
19._GC-03-032-3-11
CCCCAGCCGGGGTTTTTTCCCCGGGGX_X
20._GC-03-032-3-11
CCCCAGCCGGGGTTTTTTCCCCGGGGX_X
21._EET_272_[ECU]
_CCAGCC___TT__CCGGGGX_X
22._EET_272_[ECU]
_CCAGCC___TT__CCGGGGX_X
23._RUQ_6
_AGAGAGCCGG_AAAAGGAAGGAAX_X
24._MITC-000381
_AGAGAGCCGG_AAAAGGAAGGAAX_X
25._GC-03-32-3-11
_GGAGGGCCGG_AAAAGGGGCCGGX_X

Input profile: EET_272_[ECU] RUQ_6

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

2._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

4._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

5._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

6._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

7._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

8._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

97.2 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

10._EET_272_[ECU] RUQ_6

96.4 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

11._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

12._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

18._EET_272_[ECU] GC-03-032-3-11

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._EET_272_[ECU] GC-03-032-3-11

68.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

67.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._EET_272_[ECU]

56.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

22._EET_272_[ECU]

54.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._EET_272_[ECU] RUQ_6

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

44.4 %
36 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

33.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484